PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g005590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 155aa    MW: 17939.7 Da    PI: 8.9418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g005590.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185e-06957232
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C................... CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPk.as.................k 32
                      r  ++ +E+ RR++++  f+ L +llP+ +s                 k
  Sopen12g005590.1  9 RLEKKYVEKHRRNNMKILFNHLYSLLPPhPSqeamglpgqidasitciK 57
                      5667889*********************665666666655555555553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-9779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.134759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-8983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MYSSYSASRL EKKYVEKHRR NNMKILFNHL YSLLPPHPSQ EAMGLPGQID ASITCIKNLE  60
IKLEKSKMQL EKLRTKKRLL NEEGFEVIDS SFSLHGNSKM QIFHETKVIG NSTMVYRKVK  120
ELLNGSSSSD DIIETLLNSW DNQIYSEMLE LINLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-77HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060077.11e-101PREDICTED: uncharacterized protein LOC107005946
TrEMBLM1AD431e-46M1AD43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000202154e-46(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-10bHLH family protein